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  5. Glyma.03G227900

Glyma.03G227900


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.03G227900
Cluster HCCA clusters: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
82024 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
92492 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.04 Orthogroups_2024-Update
At4g38010 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.05 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g36120 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Brara.E02152.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.F00415.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I01685.1 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
GRMZM2G077420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G244400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G034600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.09G232200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.17G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G080630.6 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00012002-RA No alias (at4g02750 : 618.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00014659-RA No alias (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00045505-RA No alias (at2g22070 : 613.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00051746-RA No alias (at3g03580 : 720.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.001G186500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G014800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G058700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G074500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.005G187800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G105700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G068600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G106500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G053500 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
Pp1s15_448V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G237400.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.1G272500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G400300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G302500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G381200.1 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
Seita.7G277600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G339400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G119100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.04 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G141600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.04 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g006990 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc09g059580 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g006160 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g004550 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 571 692
IPR002885 Pentatricopeptide_repeat 397 444
IPR002885 Pentatricopeptide_repeat 96 143
IPR002885 Pentatricopeptide_repeat 296 341
IPR002885 Pentatricopeptide_repeat 539 565
IPR002885 Pentatricopeptide_repeat 270 290
IPR002885 Pentatricopeptide_repeat 199 228
IPR002885 Pentatricopeptide_repeat 472 495
IPR002885 Pentatricopeptide_repeat 171 197
No external refs found!