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  5. Glyma.03G237100

Glyma.03G237100


Description : zinc finger (Ran-binding) family protein


Gene families : OG_42_0001998 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.03G237100
Cluster HCCA clusters: Cluster_493

Target Alias Description ECC score Gene Family Method Actions
438605 No alias zinc finger (Ran-binding) family protein 0.02 Orthogroups_2024-Update
At1g48570 No alias T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67] 0.03 Orthogroups_2024-Update
Bradi1g11210 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g52630 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.I01697.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
GRMZM2G080139 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
GRMZM2G177885 No alias zinc finger (Ran-binding) family protein 0.04 Orthogroups_2024-Update
Kfl00181_0230 kfl00181_0230_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.015G038200 No alias zinc finger (Ran-binding) family protein 0.02 Orthogroups_2024-Update
Pp1s65_73V6 No alias zinc finger (ran-binding) family protein 0.03 Orthogroups_2024-Update
Seita.2G109900.1 No alias RNA editing factor *(OZ) 0.07 Orthogroups_2024-Update
Sobic.001G119600.1 No alias RNA editing factor *(OZ) 0.07 Orthogroups_2024-Update
Sobic.002G112600.1 No alias RNA editing factor *(OZ) 0.1 Orthogroups_2024-Update
Solyc01g099230 No alias Zinc finger family protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen03g037640 No alias Zn-finger in Ran binding protein and others 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 370 397
IPR001876 Znf_RanBP2 337 364
No external refs found!