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  5. Glyma.03G241800

Glyma.03G241800


Description : gamma histone variant H2AX


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.03G241800
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
170948 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
A4A49_29055 No alias putative histone h2a.4 0.06 Orthogroups_2024-Update
A4A49_30810 No alias histone h2ax 0.07 Orthogroups_2024-Update
At1g08880 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178W8H7] 0.04 Orthogroups_2024-Update
At1g54690 No alias Probable histone H2AXb [Source:UniProtKB/Swiss-Prot;Acc:Q9S9K7] 0.04 Orthogroups_2024-Update
At4g27230 No alias Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826] 0.03 Orthogroups_2024-Update
At5g27670 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178UFF2] 0.04 Orthogroups_2024-Update
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.05 Orthogroups_2024-Update
Bradi1g25390 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Bradi1g66360 No alias histone H2A 6 0.02 Orthogroups_2024-Update
Bradi1g66370 No alias histone H2A 6 0.03 Orthogroups_2024-Update
Bradi4g06010 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02813.1 No alias histone *(H2A) 0.07 Orthogroups_2024-Update
Brara.B01060.1 No alias histone *(H2A) 0.07 Orthogroups_2024-Update
Brara.C01065.1 No alias histone *(H2A) 0.08 Orthogroups_2024-Update
Brara.E02150.1 No alias histone *(H2A) 0.08 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.12 Orthogroups_2024-Update
Cre06.g264950 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre12.g506250 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.04 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.06 Orthogroups_2024-Update
GRMZM2G109448 No alias histone H2A 12 0.03 Orthogroups_2024-Update
GRMZM2G130746 No alias histone H2A 12 0.02 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.06 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU4Hr1G070250.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G006080.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G006140.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G092390.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.03 Orthogroups_2024-Update
Kfl00125_0190 kfl00125_0190_v1.1 (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os05g38640 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
MA_10434390g0020 No alias (at4g27230 : 174.0) Encodes HTA2, a histone H2A... 0.03 Orthogroups_2024-Update
MA_11514g0010 No alias (p50567|h2a_chlre : 116.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
MA_213048g0010 No alias (p50567|h2a_chlre : 115.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
MA_962778g0010 No alias (q2hu68|h2a1_medtr : 184.0) Probable histone H2A.1 -... 0.05 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
Mp3g02370.1 No alias histone (H2A) 0.03 Orthogroups_2024-Update
Potri.005G026500 No alias histone H2A 7 0.03 Orthogroups_2024-Update
Pp1s72_86V6 No alias histone h2a 0.03 Orthogroups_2024-Update
Seita.2G287100.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.3G063000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.5G370600.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.9G450000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Sobic.001G416900.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.002G059200.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.002G276000.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.07 Orthogroups_2024-Update
Solyc09g010400 No alias Histone H2A (AHRD V3.3 *** K4CR67_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.07 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.05 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.06 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.06 Orthogroups_2024-Update
Solyc11g073260 No alias Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) 0.05 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.07 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen03g001250 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen06g035820 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 94
IPR032454 Histone_H2A_C 97 130
No external refs found!