Glyma.03G255500

Description : cytokinin response factor 4

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.03G255500
Cluster	HCCA clusters: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
A4A49_03202	No alias	ethylene-responsive transcription factor erf053	0.03	Orthogroups_2024-Update
A4A49_08959	No alias	ethylene-responsive transcription factor rap2-11	0.03	Orthogroups_2024-Update
A4A49_16244	No alias	ethylene-responsive transcription factor rap2-11	0.03	Orthogroups_2024-Update
A4A49_20188	No alias	ethylene-responsive transcription factor erf062	0.03	Orthogroups_2024-Update
A4A49_38622	No alias	dehydration-responsive element-binding protein 3	0.03	Orthogroups_2024-Update
A4A49_40092	No alias	ethylene-responsive transcription factor crf2	0.03	Orthogroups_2024-Update
At1g74930	No alias	Ethylene-responsive transcription factor ERF018...	0.03	Orthogroups_2024-Update
At4g17500	No alias	Ethylene-responsive transcription factor 1A...	0.04	Orthogroups_2024-Update
At4g34410	No alias	Ethylene-responsive transcription factor ERF109...	0.03	Orthogroups_2024-Update
Bradi1g54450	No alias	related to AP2 11	0.03	Orthogroups_2024-Update
Bradi1g72449	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Brara.A01860.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.A03039.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.03	Orthogroups_2024-Update
Brara.B00415.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.D02449.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Brara.F01050.1	No alias	cutin and suberin biosynthesis transcription factor...	0.03	Orthogroups_2024-Update
GRMZM2G003466	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G148333	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G175543	No alias	ethylene responsive element binding factor 4	0.02	Orthogroups_2024-Update
Glyma.02G261700	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.04G041200	No alias	DREB and EAR motif protein 3	0.03	Orthogroups_2024-Update
Glyma.04G251400	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.05G049900	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G216600	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.10G036700	No alias	ethylene response factor 1	0.03	Orthogroups_2024-Update
Glyma.19G163900	No alias	ethylene response factor 1	0.04	Orthogroups_2024-Update
Glyma.19G164100	No alias	ethylene response factor 1	0.02	Orthogroups_2024-Update
Glyma.20G215700	No alias	cytokinin response factor 4	0.04	Orthogroups_2024-Update
HORVU1Hr1G082310.1	No alias	subgroup ERF-X transcription factor	0.03	Orthogroups_2024-Update
HORVU2Hr1G103660.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU5Hr1G018720.1	No alias	transcription factor *(ERN1) & subgroup ERF-V...	0.03	Orthogroups_2024-Update
LOC_Os02g43970	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g07830	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g22730	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
MA_10433310g0010	No alias	(at5g11590 : 108.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
MA_5629699g0010	No alias	(at5g21960 : 89.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
MA_65877g0010	No alias	(at3g16280 : 101.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
MA_900190g0010	No alias	(at1g01250 : 124.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
Mp1g20040.1	No alias	transcription factor (ERF)	0.03	Orthogroups_2024-Update
PSME_00008357-RA	No alias	(at5g21960 : 123.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
PSME_00014384-RA	No alias	(at5g21960 : 93.6) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
PSME_00037661-RA	No alias	(at4g17500 : 149.0) Encodes a member of the ERF...	0.03	Orthogroups_2024-Update
PSME_00046682-RA	No alias	(at3g16770 : 96.3) Encodes a member of the ERF (ethylene...	0.04	Orthogroups_2024-Update
PSME_00048384-RA	No alias	(at5g11190 : 113.0) encodes a member of the ERF...	0.02	Orthogroups_2024-Update
PSME_00050917-RA	No alias	(at1g74930 : 122.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
PSME_00052064-RA	No alias	(at5g21960 : 132.0) encodes a member of the DREB...	0.02	Orthogroups_2024-Update
PSME_00057235-RA	No alias	(at5g11590 : 122.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
Potri.002G124000	No alias	related to AP2 1	0.03	Orthogroups_2024-Update
Potri.009G147700	No alias	dehydration response element B1A	0.05	Orthogroups_2024-Update
Potri.014G046800	No alias	ethylene-responsive element binding factor 13	0.04	Orthogroups_2024-Update
Potri.017G013700	No alias	erf domain protein 9	0.04	Orthogroups_2024-Update
Potri.017G055400	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Potri.019G131300	No alias	cytokinin response factor 4	0.03	Orthogroups_2024-Update
Pp1s195_38V6	No alias	ap2 erf domain-containing transcription factor	0.02	Orthogroups_2024-Update
Seita.2G156100.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Seita.2G156200.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Seita.2G276200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.2G430400.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.02	Orthogroups_2024-Update
Seita.4G039700.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.9G320700.1	No alias	subgroup ERF-IX transcription factor	0.05	Orthogroups_2024-Update
Sobic.002G115400.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.003G442100.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Sobic.005G103000.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Sobic.009G170800.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Solyc01g009440	No alias	C-repeat binding factor 1 (AHRD V3.3 *** A0A077B5X4_9ROSI)	0.03	Orthogroups_2024-Update
Solyc05g052030	No alias	ethylene response factor 4	0.08	Orthogroups_2024-Update
Sopen05g005260	No alias	AP2 domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	Predicted GO
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Predicted GO
BP	GO:0015858	nucleoside transport	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
BP	GO:0031347	regulation of defense response	IEP	Predicted GO
BP	GO:0032101	regulation of response to external stimulus	IEP	Predicted GO
BP	GO:0043900	regulation of multi-organism process	IEP	Predicted GO
BP	GO:0045088	regulation of innate immune response	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
BP	GO:0050776	regulation of immune response	IEP	Predicted GO
BP	GO:0080134	regulation of response to stress	IEP	Predicted GO
BP	GO:1901264	carbohydrate derivative transport	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO
BP	GO:1901642	nucleoside transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	108	156

External Links

No external refs found!

Glyma.03G255500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation