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Description : 60S acidic ribosomal protein family
Gene families : OG_42_0002306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002306_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Glycine release: Glyma.03G260900 | |
| Cluster | HCCA clusters: Cluster_158 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 133023 | No alias | 60S acidic ribosomal protein family | 0.17 | Orthogroups_2024-Update | |
| At1g01100 | No alias | 60S acidic ribosomal protein P1-1... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g13750 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| Brara.C02860.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Brara.I00080.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Brara.I05590.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Brara.J00070.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Cre17.g738300 | No alias | 60S acidic ribosomal protein family | 0.15 | Orthogroups_2024-Update | |
| HORVU7Hr1G075360.2 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Kfl01021_0050 | kfl01021_0050_v1.1 | (p29763|rla1_chlre : 92.0) 60S acidic ribosomal protein... | 0.02 | Orthogroups_2024-Update | |
| LOC_Os08g02340 | No alias | 60S acidic ribosomal protein, putative, expressed | 0.05 | Orthogroups_2024-Update | |
| Mp6g11950.1 | No alias | component RPP1 of LSU proteome component | 0.17 | Orthogroups_2024-Update | |
| PSME_00011424-RA | No alias | (at5g24510 : 97.1) 60S acidic ribosomal protein family;... | 0.1 | Orthogroups_2024-Update | |
| Potri.012G021700 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| Potri.014G105400 | No alias | 60S acidic ribosomal protein family | 0.07 | Orthogroups_2024-Update | |
| Potri.015G004700 | No alias | 60S acidic ribosomal protein family | 0.06 | Orthogroups_2024-Update | |
| Pp1s134_153V6 | No alias | 60s acidic ribosomal protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s152_152V6 | No alias | 60s acidic ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Pp1s28_131V6 | No alias | 60s acidic ribosomal protein | 0.11 | Orthogroups_2024-Update | |
| Pp1s49_284V6 | No alias | 60s acidic ribosomal protein | 0.07 | Orthogroups_2024-Update | |
| Pp1s68_115V6 | No alias | 60s acidic ribosomal protein p1 | 0.13 | Orthogroups_2024-Update | |
| Seita.6G085600.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G018300.1 | No alias | component *(RPP1) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Solyc01g104370 | No alias | 60S acidic ribosomal protein P1 (AHRD V3.3 *** A0A199VEQ5_ANACO) | 0.11 | Orthogroups_2024-Update | |
| Sopen01g002170 | No alias | 60s Acidic ribosomal protein | 0.14 | Orthogroups_2024-Update | |
| Sopen01g030870 | No alias | 60s Acidic ribosomal protein | 0.06 | Orthogroups_2024-Update | |
| Sopen01g046810 | No alias | 60s Acidic ribosomal protein | 0.14 | Orthogroups_2024-Update | |
| evm.model.contig_2051.2 | No alias | no hits & (original description: no original description) | 0.13 | Orthogroups_2024-Update | |
| evm.model.contig_4546.2 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |