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  5. Glyma.04G012700

Glyma.04G012700


Description : cold, circadian rhythm, and rna binding 2


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.04G012700
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
81392 No alias glycine-rich RNA-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_14417 No alias glycine-rich rna-binding protein 7 0.03 Orthogroups_2024-Update
A4A49_27721 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
A4A49_62682 No alias glycine-rich rna-binding protein 0.05 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi2g58690 No alias glycine-rich RNA-binding protein 4 0.03 Orthogroups_2024-Update
Bradi4g00940 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Brara.B02117.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Brara.H00482.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G042118 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Kfl00090_0320 kfl00090_0320_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00609_0010 kfl00609_0010_v1.... (p49310|grp1_sinal : 126.0) Glycine-rich RNA-binding... 0.02 Orthogroups_2024-Update
LOC_Os03g61990 No alias glycine-rich RNA-binding protein 7, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g04440 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g31800 No alias glycine-rich RNA-binding protein 7, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.05 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.04 Orthogroups_2024-Update
Pp1s45_280V6 No alias glycine-rich rna-binding 0.03 Orthogroups_2024-Update
Seita.2G381300.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
Seita.5G173500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Seita.9G021300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g109660 No alias meloidogyne-induced giant cell protein DB275 0.05 Orthogroups_2024-Update
Solyc10g051390 No alias RNA-binding glycine-rich protein (AHRD V3.3 *** D6PZY6_TOBAC) 0.03 Orthogroups_2024-Update
Sopen01g051850 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
Sopen10g023080 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 11 79
No external refs found!