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  5. Glyma.04G057400

Glyma.04G057400


Description : dicer-like 3


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.04G057400
Cluster HCCA clusters: Cluster_443

Target Alias Description ECC score Gene Family Method Actions
At3g03300 No alias Endoribonuclease Dicer homolog 2... 0.04 Orthogroups_2024-Update
Kfl00265_0060 kfl00265_0060_v1.1 (at1g01040 : 525.0) Encodes a Dicer homolog. Dicer is a... 0.01 Orthogroups_2024-Update
LOC_Os03g02970 No alias Dicer, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00034426-RA No alias (at1g01040 : 454.0) Encodes a Dicer homolog. Dicer is a... 0.04 Orthogroups_2024-Update
Solyc08g067210 No alias Dicer-like 3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016787 hydrolase activity IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051011 microtubule minus-end binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003100 PAZ_dom 919 1054
IPR000999 RNase_III_dom 1096 1231
IPR000999 RNase_III_dom 1308 1414
IPR006935 Helicase/UvrB_N 65 230
IPR001650 Helicase_C 427 531
IPR005034 Dicer_dimerisation_dom 601 686
No external refs found!