Glyma.04G116000

Description : PIF1 helicase

Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.04G116000
Cluster	HCCA clusters: Cluster_539

Target	Alias	Description	ECC score	Gene Family Method
Brara.A01906.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Brara.I02702.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.K00766.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Glyma.01G057801	No alias	Function unknown	0.03	Orthogroups_2024-Update
Glyma.01G135100	No alias	PIF1 helicase	0.06	Orthogroups_2024-Update
Glyma.07G171700	No alias	PIF1 helicase	0.07	Orthogroups_2024-Update
Glyma.09G061100	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Glyma.09G080200	No alias	PIF1 helicase	0.06	Orthogroups_2024-Update
Glyma.12G111300	No alias	PIF1 helicase	0.06	Orthogroups_2024-Update
Glyma.13G154900	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.15G190000	No alias	Function unknown	0.07	Orthogroups_2024-Update
Glyma.15G193800	No alias	PIF1 helicase	0.06	Orthogroups_2024-Update
Glyma.16G109000	No alias	PIF1 helicase	0.04	Orthogroups_2024-Update
Glyma.20G059700	No alias	Function unknown	0.06	Orthogroups_2024-Update
LOC_Os04g23360	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os04g28820	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g31990	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Seita.1G145600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.1G148500.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.3G310800.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.4G140900.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.6G097900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.8G193900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc04g076160	No alias	AT hook motif-containing protein, putative, expressed...	0.04	Orthogroups_2024-Update
Sopen11g011570	No alias	PIF1-like helicase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004857	enzyme inhibitor activity	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
MF	GO:0030570	pectate lyase activity	IEP	Predicted GO
MF	GO:0030599	pectinesterase activity	IEP	Predicted GO
CC	GO:0031012	extracellular matrix	IEP	Predicted GO
BP	GO:0042545	cell wall modification	IEP	Predicted GO
CC	GO:0044421	extracellular region part	IEP	Predicted GO
BP	GO:0045229	external encapsulating structure organization	IEP	Predicted GO
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predicted GO
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predicted GO
BP	GO:0071555	cell wall organization	IEP	Predicted GO
MF	GO:0098772	molecular function regulator	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	70	253

External Links

No external refs found!

Glyma.04G116000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation