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  5. Glyma.04G124300

Glyma.04G124300


Description : far-red elongated hypocotyls 3


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.04G124300
Cluster HCCA clusters: Cluster_317

Target Alias Description ECC score Gene Family Method Actions
Bradi1g06907 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi1g48350 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Bradi4g16767 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Brara.E02013.1 No alias transcriptional regulator of red/far-red light... 0.03 Orthogroups_2024-Update
Glyma.09G019300 No alias FAR1-related sequence 6 0.04 Orthogroups_2024-Update
Glyma.14G043900 No alias FAR1-related sequence 3 0.03 Orthogroups_2024-Update
LOC_Os11g14020 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.016G018100 No alias FAR1-related sequence 2 0.03 Orthogroups_2024-Update
Potri.016G059200 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Solyc07g045520 No alias FAR1-related sequence 10 (AHRD V3.3 *** AT5G28530.3) 0.04 Orthogroups_2024-Update
Sopen03g040440 No alias FAR1 DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 89 191
IPR018289 MULE_transposase_dom 288 380
IPR007527 Znf_SWIM 576 602
No external refs found!