Glyma.04G231500

Description : Ubiquitin supergroup;Ribosomal protein L40e

Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.04G231500
Cluster	HCCA clusters: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
101548	No alias	ubiquitin 5	0.02	Orthogroups_2024-Update
19615	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
93613	No alias	related to ubiquitin 1	0.02	Orthogroups_2024-Update
At2g35635	No alias	UBQ7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL95]	0.04	Orthogroups_2024-Update
At2g36170	No alias	Ubiquitin-60S ribosomal protein L40-1...	0.06	Orthogroups_2024-Update
At3g52590	No alias	Ubiquitin-60S ribosomal protein L40-1...	0.04	Orthogroups_2024-Update
At4g02970	No alias	Function unknown	0.03	Orthogroups_2024-Update
Bradi1g32700	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
Bradi1g68940	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
Bradi2g12280	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.05	Orthogroups_2024-Update
Bradi2g34750	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Bradi4g10327	No alias	polyubiquitin 10	0.04	Orthogroups_2024-Update
Bradi4g38540	No alias	ubiquitin extension protein 1	0.03	Orthogroups_2024-Update
Brara.C01815.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.C02349.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.E00858.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.E00859.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.G00981.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.I03566.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.I04302.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Cre01.g007051	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.02	Orthogroups_2024-Update
Cre06.g273600	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
GRMZM2G006293	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Glyma.02G036000	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Glyma.15G129800	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.05	Orthogroups_2024-Update
Glyma.17G042100	No alias	polyubiquitin 10	0.05	Orthogroups_2024-Update
HORVU4Hr1G001170.5	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
HORVU7Hr1G103550.4	No alias	UBQ ubiquitin-fold protein	0.02	Orthogroups_2024-Update
Kfl00013_0180	kfl00013_0180_v1....	(at5g03240 : 138.0) encodes ubiquitin that is attached...	0.01	Orthogroups_2024-Update
LOC_Os07g30640	No alias	ubiquitin fusion protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os09g25320	No alias	ubiquitin family protein, putative, expressed	0.02	Orthogroups_2024-Update
Mp7g12490.1	No alias	component RPL40 of LSU proteome component	0.04	Orthogroups_2024-Update
Mp7g12760.1	No alias	component RPS27a of SSU proteome	0.03	Orthogroups_2024-Update
Mp7g14690.1	No alias	component RPS27a of SSU proteome	0.02	Orthogroups_2024-Update
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.02	Orthogroups_2024-Update
Potri.001G025300	No alias	ubiquitin 6	0.04	Orthogroups_2024-Update
Potri.012G024300	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
Pp1s17_265V6	No alias	polyubiquitin containing 7 ubiquitin monomers	0.03	Orthogroups_2024-Update
Pp1s268_35V6	No alias	ubiquitin fusion protein	0.03	Orthogroups_2024-Update
Seita.2G133700.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.7G270700.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Seita.9G478400.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.001G444800.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.002G135200.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.003G152600.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.009G054800.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Solyc03g082570	No alias	ubiquitin-ribosomal fusion protein	0.04	Orthogroups_2024-Update
Solyc08g008590	No alias	ubiquitin-ribosomal fusion protein	0.05	Orthogroups_2024-Update
Solyc12g098940	No alias	Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO)	0.03	Orthogroups_2024-Update
Solyc12g099030	No alias	Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO)	0.03	Orthogroups_2024-Update
Sopen01g029970	No alias	Ubiquitin family	0.04	Orthogroups_2024-Update
Sopen01g040060	No alias	Ubiquitin family	0.05	Orthogroups_2024-Update
Sopen08g031340	No alias	Ubiquitin family	0.04	Orthogroups_2024-Update
Sopen12g033760	No alias	Ubiquitin family	0.03	Orthogroups_2024-Update
evm.model.contig_2055.11	No alias	(at3g52590 : 241.0) Ubiquitin extension protein;...	0.04	Orthogroups_2024-Update
evm.model.contig_3445.1	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
evm.model.tig00022075.50	No alias	(at3g52590 : 236.0) Ubiquitin extension protein;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006177	GMP biosynthetic process	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
BP	GO:0008202	steroid metabolic process	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
BP	GO:0016125	sterol metabolic process	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Predicted GO
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Predicted GO
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predicted GO
CC	GO:0031012	extracellular matrix	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
CC	GO:0044421	extracellular region part	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0046037	GMP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
MF	GO:0047750	cholestenol delta-isomerase activity	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin_dom	3	74
IPR001975	Ribosomal_L40e	78	127

External Links

No external refs found!

Glyma.04G231500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation