Glyma.04G252100

Description : cold shock domain protein 1

Gene families : OG_42_0001475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001475_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.04G252100
Cluster	HCCA clusters: Cluster_134

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc02g083800	No alias	Cold-shock DNA-binding family protein (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predicted GO
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Predicted GO
BP	GO:0019684	photosynthesis, light reaction	IEP	Predicted GO
BP	GO:0022900	electron transport chain	IEP	Predicted GO
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002059	CSP_DNA-bd	8	71
IPR001878	Znf_CCHC	148	164
IPR001878	Znf_CCHC	106	120

External Links

No external refs found!