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  5. Glyma.05G133400

Glyma.05G133400


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.05G133400
Cluster HCCA clusters: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
Brara.F00451.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.08G087900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G031600 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G226500 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU7Hr1G078960.2 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Potri.008G100500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 136 442
No external refs found!