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  5. Glyma.05G147200

Glyma.05G147200


Description : Rubber elongation factor protein (REF)


Gene families : OG_42_0001183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.05G147200
Cluster HCCA clusters: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
A4A49_56148 No alias stress-related protein 0.03 Orthogroups_2024-Update
LOC_Os05g05940 No alias stress-related protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00038248-RA No alias (at3g05500 : 95.9) Rubber elongation factor protein... 0.03 Orthogroups_2024-Update
Sobic.002G412800.1 No alias lipid droplet-associated factor *(LDAP) 0.03 Orthogroups_2024-Update
Sopen09g029750 No alias Rubber elongation factor protein (REF) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
InterPro domains Description Start Stop
IPR008802 REF 13 213
No external refs found!