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  5. Glyma.06G072200

Glyma.06G072200


Description : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain


Gene families : OG_42_0000674 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.06G072200
Cluster HCCA clusters: Cluster_317

Target Alias Description ECC score Gene Family Method Actions
Bradi2g43077 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.03 Orthogroups_2024-Update
Bradi2g43087 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 Orthogroups_2024-Update
Bradi3g55060 No alias LEUNIG_homolog 0.03 Orthogroups_2024-Update
GRMZM2G079013 No alias LEUNIG_homolog 0.02 Orthogroups_2024-Update
PSME_00038141-RA No alias (at4g32551 : 236.0) LEUNIG regulates floral organ... 0.02 Orthogroups_2024-Update
Potri.001G049400 No alias LEUNIG_homolog 0.03 Orthogroups_2024-Update
Sobic.003G214700.1 No alias component *(LUG/LUH) of transcriptional co-repressor complex 0.04 Orthogroups_2024-Update
Solyc02g078000 No alias No description available 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 647 682
IPR001680 WD40_repeat 771 805
IPR001680 WD40_repeat 689 726
IPR001680 WD40_repeat 610 639
IPR001680 WD40_repeat 855 892
IPR006594 LisH 10 36
No external refs found!