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  5. Glyma.06G092800

Glyma.06G092800


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.06G092800
Cluster HCCA clusters: Cluster_279

Target Alias Description ECC score Gene Family Method Actions
Glyma.18G150600 No alias Rhamnogalacturonate lyase family protein 0.04 Orthogroups_2024-Update
PSME_00001722-RA No alias (at1g09910 : 793.0) Rhamnogalacturonate lyase family... 0.02 Orthogroups_2024-Update
Seita.7G310700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G003600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G024100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G173300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc05g051350 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 440 628
IPR010325 Rhamnogal_lyase 9 200
IPR029413 RG-lyase_II 354 426
No external refs found!