Glyma.06G093500

Description : ubiquitin-specific protease 16

Gene families : OG_42_0000241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.06G093500
Cluster	HCCA clusters: Cluster_458

Target	Alias	Description	ECC score	Gene Family Method
420048	No alias	ubiquitin-specific protease 19	0.03	Orthogroups_2024-Update
A4A49_07781	No alias	ubiquitin carboxyl-terminal hydrolase 16	0.03	Orthogroups_2024-Update
At2g24640	No alias	Ubiquitin carboxyl-terminal hydrolase 19...	0.04	Orthogroups_2024-Update
Bradi1g47320	No alias	ubiquitin-specific protease 23	0.02	Orthogroups_2024-Update
Brara.F02412.1	No alias	deubiquitinase *(UBP15-21)	0.03	Orthogroups_2024-Update
GRMZM2G126447	No alias	ubiquitin-specific protease 15	0.02	Orthogroups_2024-Update
Glyma.08G175500	No alias	ubiquitin-specific protease 25	0.03	Orthogroups_2024-Update
Glyma.15G248200	No alias	ubiquitin-specific protease 15	0.04	Orthogroups_2024-Update
Kfl00068_0060	kfl00068_0060_v1.1	(at2g24640 : 462.0) ubiquitin-specific protease 19...	0.01	Orthogroups_2024-Update
LOC_Os05g43480	No alias	ubiquitin carboxyl-terminal hydrolase domain containing...	0.04	Orthogroups_2024-Update
LOC_Os06g08530	No alias	ubiquitin carboxyl-terminal hydrolase domain containing...	0.04	Orthogroups_2024-Update
MA_10429414g0020	No alias	(at4g31670 : 528.0) ubiquitin-specific protease 18...	0.03	Orthogroups_2024-Update
MA_10431488g0010	No alias	(at5g57990 : 470.0) Encodes a ubiquitin-specific...	0.04	Orthogroups_2024-Update
Mp3g16110.1	No alias	deubiquitinase (UBP23)	0.02	Orthogroups_2024-Update
PSME_00034135-RA	No alias	(at5g57990 : 441.0) Encodes a ubiquitin-specific...	0.03	Orthogroups_2024-Update
Seita.1G020500.1	No alias	regulatory deubiquitinase (UBP15) & deubiquitinase (UBP15-21)	0.03	Orthogroups_2024-Update
Seita.4G192800.1	No alias	deubiquitinase *(UBP15-21)	0.02	Orthogroups_2024-Update
Seita.6G185200.1	No alias	deubiquitinase *(UBP15-21)	0.04	Orthogroups_2024-Update
Seita.9G310900.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.004G107200.2	No alias	regulatory deubiquitinase (UBP15) & deubiquitinase (UBP15-21)	0.03	Orthogroups_2024-Update
Sobic.007G159900.2	No alias	deubiquitinase *(UBP15-21)	0.02	Orthogroups_2024-Update
Sobic.010G213500.1	No alias	deubiquitinase *(UBP15-21)	0.03	Orthogroups_2024-Update
Sopen07g001630	No alias	Ubiquitin carboxyl-terminal hydrolase	0.03	Orthogroups_2024-Update
Sopen08g022700	No alias	Ubiquitin carboxyl-terminal hydrolase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	InterProScan predictions
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Predicted GO
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Predicted GO
BP	GO:0006479	protein methylation	IEP	Predicted GO
BP	GO:0007275	multicellular organism development	IEP	Predicted GO
CC	GO:0008023	transcription elongation factor complex	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008170	N-methyltransferase activity	IEP	Predicted GO
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Predicted GO
BP	GO:0008213	protein alkylation	IEP	Predicted GO
MF	GO:0008276	protein methyltransferase activity	IEP	Predicted GO
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
MF	GO:0016421	CoA carboxylase activity	IEP	Predicted GO
BP	GO:0016569	covalent chromatin modification	IEP	Predicted GO
BP	GO:0016570	histone modification	IEP	Predicted GO
BP	GO:0016571	histone methylation	IEP	Predicted GO
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Predicted GO
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predicted GO
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0018205	peptidyl-lysine modification	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031491	nucleosome binding	IEP	Predicted GO
BP	GO:0032501	multicellular organismal process	IEP	Predicted GO
BP	GO:0032502	developmental process	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034968	histone lysine methylation	IEP	Predicted GO
BP	GO:0036260	RNA capping	IEP	Predicted GO
MF	GO:0042054	histone methyltransferase activity	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043248	proteasome assembly	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
BP	GO:0048856	anatomical structure development	IEP	Predicted GO
MF	GO:0070568	guanylyltransferase activity	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	600	886
IPR002893	Znf_MYND	76	113

External Links

No external refs found!

Glyma.06G093500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation