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  5. Sopen09g020310

Sopen09g020310


Description : Retroviral aspartyl protease


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g020310
Cluster HCCA clusters: Cluster_429

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g17830 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g33450 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g10244 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.05 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.01 Orthogroups_2024-Update
Sopen01g013800 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.09 Orthogroups_2024-Update
Sopen01g015430 No alias Retroviral aspartyl protease 0.05 Orthogroups_2024-Update
Sopen02g001080 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen02g004560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen02g028910 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen03g017250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen04g035310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen05g010930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g012930 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen05g017540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen06g009540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g010330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g011960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen07g006330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g007650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g009610 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen08g019900 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g007750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.17 Orthogroups_2024-Update
Sopen10g008020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g011720 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen11g020800 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen12g025510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen12g028100 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 3 60
IPR001584 Integrase_cat-core 996 1066
IPR001878 Znf_CCHC 1475 1491
IPR001878 Znf_CCHC 168 184
IPR000477 RT_dom 501 660
No external refs found!