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  5. Glyma.06G164800

Glyma.06G164800


Description : fibrillarin 2


Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.06G164800
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Brara.A01555.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.05 Orthogroups_2024-Update
Brara.H01568.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
Cre02.g077300 No alias fibrillarin 2 0.02 Orthogroups_2024-Update
HORVU6Hr1G091860.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.05 Orthogroups_2024-Update
PSME_00017689-RA No alias (at4g25630 : 209.0) encodes a fibrillarin, a key... 0.03 Orthogroups_2024-Update
Seita.1G370900.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
Sobic.004G349700.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.04 Orthogroups_2024-Update
Solyc03g025270 No alias fibrillarin 2 (AHRD V3.3 *** AT4G25630.1) 0.04 Orthogroups_2024-Update
Sopen03g004100 No alias Fibrillarin 0.04 Orthogroups_2024-Update
evm.model.tig00001049.16 No alias (at5g52470 : 336.0) encodes a fibrillarin, a key... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR000692 Fibrillarin 68 295
No external refs found!