1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen09g021360

Sopen09g021360


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g021360

Target Alias Description ECC score Gene Family Method Actions
At1g79840 No alias HD-ZIP IV family of homeobox-leucine zipper protein with... 0.04 Orthogroups_2024-Update
GRMZM2G126646 No alias homeodomain GLABROUS 11 0.03 Orthogroups_2024-Update
Glyma.16G196700 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.03 Orthogroups_2024-Update
LOC_Os01g55549 No alias homeobox and START domains containing protein, putative,... 0.02 Orthogroups_2024-Update
Pp1s59_146V6 No alias tpa: tpa_inf: class iv hd-zip protein hdz44 0.02 Orthogroups_2024-Update
Solyc01g091630 No alias cutin deficient 2 0.02 Orthogroups_2024-Update
Solyc05g015020 No alias Homeobox-leucine zipper protein (AHRD V3.3 *-* A0A059UE00_9POAL) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0008289 lipid binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 669 828
IPR001356 Homeobox_dom 1550 1588
IPR002913 START_lipid-bd_dom 1612 1729
IPR005162 Retrotrans_gag_dom 204 300
IPR001584 Integrase_cat-core 1211 1322
No external refs found!