1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g085790

Solyc02g085790


Description : T-complex protein 1 subunit zeta 1 (AHRD V3.3 *** TCPZA_ARATH)


Gene families : OG_42_0004744 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004744_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g085790
Cluster HCCA clusters: Cluster_279

Target Alias Description ECC score Gene Family Method Actions
Bradi3g04130 No alias TCP-1/cpn60 chaperonin family protein 0.04 Orthogroups_2024-Update
Cre09.g397200 No alias TCP-1/cpn60 chaperonin family protein 0.01 Orthogroups_2024-Update
Glyma.18G298100 No alias TCP-1/cpn60 chaperonin family protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G091690.4 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex 0.04 Orthogroups_2024-Update
Kfl00177_0050 kfl00177_0050_v1.1 (at3g02530 : 867.0) TCP-1/cpn60 chaperonin family... 0.02 Orthogroups_2024-Update
Mp8g07530.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.03 Orthogroups_2024-Update
Seita.3G039600.1 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex 0.05 Orthogroups_2024-Update
Sopen02g014170 No alias TCP-1/cpn60 chaperonin family 0.04 Orthogroups_2024-Update
Sopen02g030480 No alias TCP-1/cpn60 chaperonin family 0.04 Orthogroups_2024-Update
evm.model.contig_827.1 No alias (at5g16070 : 650.0) TCP-1/cpn60 chaperonin family... 0.02 Orthogroups_2024-Update
evm.model.tig00000789.37 No alias (at3g02530 : 621.0) TCP-1/cpn60 chaperonin family... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 29 528
No external refs found!