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  5. Sopen09g022050

Sopen09g022050


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g022050
Cluster HCCA clusters: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g15400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc03g093580 No alias No description available 0.04 Orthogroups_2024-Update
Sopen03g026850 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g015850 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen08g004660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
evm.model.contig_3584.1 No alias (p10978|polx_tobac : 128.0) Retrovirus-related Pol... 0.02 Orthogroups_2024-Update
evm.model.contig_4573.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_577.4 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0009733 response to auxin IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003676 SAUR_fam 672 752
IPR001878 Znf_CCHC 224 240
IPR001584 Integrase_cat-core 439 551
No external refs found!