1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.07G020300

Glyma.07G020300


Description : RNA-binding KH domain-containing protein


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.07G020300
Cluster HCCA clusters: Cluster_514

Target Alias Description ECC score Gene Family Method Actions
Bradi4g34220 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Orthogroups_2024-Update
PSME_00004511-RA No alias (at5g15270 : 293.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
PSME_00036946-RA No alias (at5g15270 : 332.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
Potri.010G251700 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Potri.017G042500 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Seita.5G004600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.9G207200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen12g024250 No alias KH domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005047 signal recognition particle binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005785 signal recognition particle receptor complex IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 281 346
IPR004088 KH_dom_type_1 486 549
IPR004088 KH_dom_type_1 89 151
IPR004088 KH_dom_type_1 197 245
No external refs found!