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  5. Sopen09g022760

Sopen09g022760


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g022760
Cluster HCCA clusters: Cluster_389

Target Alias Description ECC score Gene Family Method Actions
30095 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
74842 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
At3g61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.02 Orthogroups_2024-Update
Bradi4g30190 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.03 Orthogroups_2024-Update
Brara.G02157.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G052470.6 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G067540.5 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G113330.1 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_42343g0010 No alias (at4g02750 : 579.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00002640-RA No alias (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00022404-RA No alias (at3g57430 : 647.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00056375-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G007900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 541 665
IPR002885 Pentatricopeptide_repeat 243 266
IPR002885 Pentatricopeptide_repeat 271 301
IPR002885 Pentatricopeptide_repeat 142 168
IPR002885 Pentatricopeptide_repeat 170 199
IPR002885 Pentatricopeptide_repeat 43 62
IPR002885 Pentatricopeptide_repeat 68 113
IPR002885 Pentatricopeptide_repeat 368 415
No external refs found!