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  5. Sopen09g023250

Sopen09g023250


Description : Retroviral aspartyl protease


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g023250
Cluster HCCA clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Potri.019G017800 No alias Function unknown 0.02 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g013800 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.02 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen04g015220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g016840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g006330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 233 283
IPR001878 Znf_CCHC 406 422
IPR000477 RT_dom 740 899
No external refs found!