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  5. Glyma.07G208300

Glyma.07G208300


Description : Sas10/U3 ribonucleoprotein (Utp) family protein


Gene families : OG_42_0001862 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001862_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.07G208300
Cluster HCCA clusters: Cluster_420

Target Alias Description ECC score Gene Family Method Actions
At2g43650 No alias Sas10/U3 ribonucleoprotein (Utp) family protein... 0.04 Orthogroups_2024-Update
Bradi2g13337 No alias Sas10/U3 ribonucleoprotein (Utp) family protein 0.03 Orthogroups_2024-Update
Bradi2g59260 No alias Sas10/Utp3/C1D family 0.03 Orthogroups_2024-Update
Brara.C02216.1 No alias regulatory protein *(THAL) of rRNA transcription control 0.05 Orthogroups_2024-Update
Cre09.g394399 No alias Sas10/U3 ribonucleoprotein (Utp) family protein 0.04 Orthogroups_2024-Update
Kfl00986_0030 kfl00986_0030_v1.1 (at1g07840 : 147.0) Sas10/Utp3/C1D family; CONTAINS... 0.01 Orthogroups_2024-Update
Mp4g18120.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Seita.5G423500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.007G217100.1 No alias regulatory protein *(THAL) of rRNA transcription control 0.04 Orthogroups_2024-Update
evm.model.contig_2062.9 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00022075.45 No alias (at2g43650 : 99.0) EMBRYO DEFECTIVE 2777 (EMB2777);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018972 Sas10_C_dom 594 666
IPR007146 Sas10/Utp3/C1D 241 320
No external refs found!