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  5. Glyma.07G250000

Glyma.07G250000


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.07G250000
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
A4A49_36084 No alias zinc finger ccch domain-containing protein 32 0.01 Orthogroups_2024-Update
Bradi2g09340 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Bradi2g09350 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
Brara.C01681.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Cre16.g689535 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
LOC_Os01g15350 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g68860 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.03 Orthogroups_2024-Update
Solyc06g008740 No alias Zinc finger transcription factor 40 0.04 Orthogroups_2024-Update
Solyc11g008900 No alias Zinc finger transcription factor 65 0.03 Orthogroups_2024-Update
Sopen06g003530 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.02 Orthogroups_2024-Update
Sopen06g019680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.04 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 354 378
IPR000571 Znf_CCCH 307 332
IPR000571 Znf_CCCH 142 166
IPR000571 Znf_CCCH 49 74
IPR000571 Znf_CCCH 96 120
No external refs found!