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  5. Glyma.07G250700

Glyma.07G250700


Description : chromatin remodeling factor17


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.07G250700
Cluster HCCA clusters: Cluster_373

Target Alias Description ECC score Gene Family Method Actions
A4A49_05437 No alias chd3-type chromatin-remodeling factor pickle 0.05 Orthogroups_2024-Update
At5g19310 No alias Probable ATP-dependent DNA helicase CHR23... 0.02 Orthogroups_2024-Update
Cre03.g158550 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
GRMZM2G177165 No alias chromatin remodeling 1 0.03 Orthogroups_2024-Update
Glyma.08G086100 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Glyma.11G067500 No alias chromatin remodeling 1 0.03 Orthogroups_2024-Update
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Pp1s223_99V6 No alias chromodomain helicase dna binding protein 5 0.02 Orthogroups_2024-Update
Pp1s245_50V6 No alias chromodomain helicase dna binding protein 3 0.03 Orthogroups_2024-Update
Solyc01g079690 No alias SWI/SNF2-type chromatin remodelling ATPase 0.02 Orthogroups_2024-Update
Solyc02g062780 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.03 Orthogroups_2024-Update
evm.model.tig00000144.188 No alias (at5g66750 : 92.4) Protein is similar to SWI2/SNF2... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006338 chromatin remodeling IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
MF GO:0031491 nucleosome binding IEA InterProScan predictions
BP GO:0043044 ATP-dependent chromatin remodeling IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR020838 DBINO 81 131
IPR000330 SNF2_N 196 463
IPR015195 SLIDE 891 1001
IPR015194 ISWI_HAND-dom 747 830
IPR001650 Helicase_C 486 598
No external refs found!