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  5. Glyma.07G252100

Glyma.07G252100


Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.07G252100
Cluster HCCA clusters: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.05 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.04 Orthogroups_2024-Update
At2g28290 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
At3g06010 No alias Probable ATP-dependent DNA helicase CHR12... 0.03 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
At5g18620 No alias Chromatin-remodeling complex ATPase... 0.03 Orthogroups_2024-Update
At5g44800 No alias PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2] 0.03 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.08 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.06 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Cre03.g162701 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.05 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.08 Orthogroups_2024-Update
HORVU1Hr1G019290.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G022450.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.02 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.05 Orthogroups_2024-Update
Kfl00055_0090 kfl00055_0090_v1.... (q7g8y3|isw2_orysa : 1337.0) Probable chromatin... 0.02 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
LOC_Os01g27040 No alias chromatin-remodeling complex ATPase chain, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08480 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.04 Orthogroups_2024-Update
MA_8990972g0010 No alias (at2g25170 : 180.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Orthogroups_2024-Update
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.05 Orthogroups_2024-Update
PSME_00005765-RA No alias (q7g8y3|isw2_orysa : 1630.0) Probable chromatin... 0.04 Orthogroups_2024-Update
PSME_00006567-RA No alias (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... 0.04 Orthogroups_2024-Update
PSME_00009907-RA No alias (at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update
PSME_00009909-RA No alias (at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized... 0.04 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.04 Orthogroups_2024-Update
Potri.010G020700 No alias Function unknown 0.02 Orthogroups_2024-Update
Pp1s223_99V6 No alias chromodomain helicase dna binding protein 5 0.02 Orthogroups_2024-Update
Pp1s235_76V6 No alias chromatin remodeling complex subunit 0.03 Orthogroups_2024-Update
Pp1s317_10V6 No alias chromodomain-helicase-dna-binding protein 0.02 Orthogroups_2024-Update
Pp1s360_39V6 No alias syd atpase chromatin binding 0.04 Orthogroups_2024-Update
Pp1s93_123V6 No alias chromodomain-helicase-dna-binding protein 0.02 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.06 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.04 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.05 Orthogroups_2024-Update
Seita.5G166800.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.07 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Sobic.010G105200.1 No alias SMARCA component *(SYD/BRM/MINU) 0.06 Orthogroups_2024-Update
Solyc01g090650 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g029130 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g062010 No alias Chromatin structure-remodeling complex subunit snf21... 0.03 Orthogroups_2024-Update
Sopen02g030080 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_2077.13 No alias (at2g13370 : 595.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.contig_2672.1 No alias (at2g25170 : 447.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update
evm.model.contig_4438.19 No alias (at3g06010 : 317.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update
evm.model.tig00000217.25 No alias (at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00000350.9 No alias (at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.01 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0042393 histone binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Predicted GO
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predicted GO
BP GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034243 regulation of transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051254 positive regulation of RNA metabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 999 1281
IPR029295 SnAC 1515 1611
IPR001650 Helicase_C 1307 1420
No external refs found!