Glyma.08G008100

Description : auxin response factor 2

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.08G008100
Cluster	HCCA clusters: Cluster_419

Target	Alias	Description	ECC score	Gene Family Method
424114	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
A4A49_29171	No alias	auxin response factor 18	0.03	Orthogroups_2024-Update
At5g37020	No alias	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]	0.03	Orthogroups_2024-Update
At5g62000	No alias	Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]	0.04	Orthogroups_2024-Update
Bradi2g59480	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Bradi3g04920	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Bradi3g45880	No alias	auxin response factor 1	0.03	Orthogroups_2024-Update
Brara.F02033.1	No alias	ARF-type transcription factor	0.05	Orthogroups_2024-Update
Glyma.01G103500	No alias	auxin response factor 9	0.03	Orthogroups_2024-Update
Glyma.03G070500	No alias	auxin response factor 9	0.03	Orthogroups_2024-Update
Glyma.05G143800	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
Glyma.07G130400	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.09G072200	No alias	Transcriptional factor B3 family protein /...	0.06	Orthogroups_2024-Update
Glyma.10G210600	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.12G164100	No alias	auxin response factor 1	0.03	Orthogroups_2024-Update
Glyma.13G174000	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.13G234200	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.14G032700	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
HORVU5Hr1G103130.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU7Hr1G033820.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
Mp4g11820.1	No alias	transcription factor (ARF)	0.04	Orthogroups_2024-Update
PSME_00015886-RA	No alias	(at1g30330 : 314.0) Encodes a member of the auxin...	0.03	Orthogroups_2024-Update
Potri.003G163600	No alias	auxin response factor 2	0.04	Orthogroups_2024-Update
Potri.004G050150	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Potri.004G078200	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Potri.005G171300	No alias	auxin response factor 17	0.04	Orthogroups_2024-Update
Potri.005G207700	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Pp1s119_32V6	No alias	auxin response	0.03	Orthogroups_2024-Update
Pp1s133_56V6	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Pp1s64_138V6	No alias	arf1-binding protein	0.03	Orthogroups_2024-Update
Seita.6G212000.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.05	Orthogroups_2024-Update
Seita.7G108100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.9G219800.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.008G096000.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc02g077560	No alias	auxin response factor 3	0.04	Orthogroups_2024-Update
Solyc03g118290	No alias	auxin response factor 2A	0.04	Orthogroups_2024-Update
Solyc12g006350	No alias	Auxin response factor (AHRD V3.3 - M1CTA3_SOLTU)	0.03	Orthogroups_2024-Update
Sopen01g045470	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen03g037200	No alias	Auxin response factor	0.05	Orthogroups_2024-Update
Sopen12g021160	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predicted GO
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006401	RNA catabolic process	IEP	Predicted GO
BP	GO:0006402	mRNA catabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
CC	GO:0008023	transcription elongation factor complex	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
MF	GO:0031491	nucleosome binding	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044248	cellular catabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	156	257
IPR010525	Auxin_resp	282	364
IPR033389	AUX/IAA_dom	775	817

External Links

No external refs found!

Glyma.08G008100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation