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  5. Sopen09g024960

Sopen09g024960


Description : Pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g024960
Cluster HCCA clusters: Cluster_386

Target Alias Description ECC score Gene Family Method Actions
At3g01270 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70] 0.03 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.03 Orthogroups_2024-Update
Glyma.18G175300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10335560g0010 No alias (at4g13210 : 131.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10353668g0010 No alias (at4g24780 : 563.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019559-RA No alias (at4g13710 : 600.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019824-RA No alias (at1g67750 : 587.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Sopen03g032210 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 174 355
No external refs found!