Sopen09g025530

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g025530
Cluster	HCCA clusters: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358542	No alias	Function unknown	0.01	Orthogroups_2024-Update
HORVU4Hr1G045110.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os10g24400	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Solyc08g043150	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g008200	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g023200	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen07g008930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen08g015130	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen08g020120	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen09g030490	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen10g008020	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen11g009960	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update
Sopen11g019830	No alias	Integrase core domain	0.04	Orthogroups_2024-Update
Sopen11g022720	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g023250	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	79	151
IPR000477	RT_dom	1492	1649
IPR005162	Retrotrans_gag_dom	987	1082
IPR013103	RVT_2	618	859
IPR023780	Chromo_domain	2239	2292
IPR001584	Integrase_cat-core	169	280
IPR001584	Integrase_cat-core	1998	2109

External Links

No external refs found!