Sopen09g025650

Description : Psb28 protein

Gene families : OG_42_0005420 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005420_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g025650
Cluster	HCCA clusters: Cluster_203

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g02550	No alias	photosystem II reaction center PSB28 protein	0.02	Orthogroups_2024-Update
LOC_Os01g71190	No alias	photosystem II reaction center PSB28 protein,...	0.03	Orthogroups_2024-Update
MA_18349g0010	No alias	(at4g28660 : 201.0) Similar to PsbW subunit of...	0.05	Orthogroups_2024-Update
Mp2g14630.1	No alias	Psb28 protein involved in PS-II assembly	0.03	Orthogroups_2024-Update
Potri.002G256400	No alias	photosystem II reaction center PSB28 protein	0.03	Orthogroups_2024-Update
Pp1s80_16V6	No alias	photosystem ii 13kd chloroplast precursor	0.03	Orthogroups_2024-Update
Seita.5G446500.1	No alias	protein involved in PS-II assembly *(Psb28)	0.03	Orthogroups_2024-Update
Sobic.003G419900.1	No alias	protein involved in PS-II assembly *(Psb28)	0.03	Orthogroups_2024-Update
Solyc09g064500	No alias	Photosystem II reaction center Psb28 protein (AHRD V3.3...	0.1	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	InterProScan predictions
CC	GO:0009654	photosystem II oxygen evolving complex	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	InterProScan predictions
CC	GO:0016020	membrane	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005610	PSII_Psb28_class-1	72	177

External Links

No external refs found!