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  5. Glyma.08G087900

Glyma.08G087900


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G087900
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
At1g48100 No alias Polygalacturonase At1g48100... 0.04 Orthogroups_2024-Update
Brara.C02842.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.F00451.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.I01674.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.J00111.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
GRMZM2G026804 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G170388 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.02G009300 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.05G133400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G031600 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.19G219700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g19170 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00037942-RA No alias (at1g48100 : 504.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Seita.3G300900.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Sobic.003G141800.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Solyc02g032090 No alias LOW QUALITY:Pectin lyase-like superfamily protein,... 0.03 Orthogroups_2024-Update
Sopen01g044440 No alias Glycosyl hydrolases family 28 0.04 Orthogroups_2024-Update
Sopen04g003350 No alias Glycosyl hydrolases family 28 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 125 436
No external refs found!