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  5. Glyma.08G130800

Glyma.08G130800


Description : RING domain ligase2


Gene families : OG_42_0000469 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G130800
Cluster HCCA clusters: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Bradi2g61442 No alias Copine (Calcium-dependent phospholipid-binding protein) family 0.03 Orthogroups_2024-Update
GRMZM2G118265 No alias Copine (Calcium-dependent phospholipid-binding protein) family 0.02 Orthogroups_2024-Update
HORVU5Hr1G091920.4 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.03 Orthogroups_2024-Update
LOC_Os08g38600 No alias copine, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00032354-RA No alias (at5g14420 : 438.0) RING domain ligase2 (RGLG2);... 0.02 Orthogroups_2024-Update
Potri.001G342200 No alias RING domain ligase2 0.03 Orthogroups_2024-Update
Seita.6G073900.1 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.05 Orthogroups_2024-Update
Sobic.002G131800.4 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.03 Orthogroups_2024-Update
Solyc05g053870 No alias E3 ubiquitin-protein ligase RGLG2 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc09g065870 No alias E3 ubiquitin-protein ligase RGLG2-like protein (AHRD... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR010734 Copine 144 356
No external refs found!