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  5. Glyma.08G141700

Glyma.08G141700


Description : Ribosomal protein L6 family protein


Gene families : OG_42_0002426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G141700
Cluster HCCA clusters: Cluster_426

Target Alias Description ECC score Gene Family Method Actions
270686 No alias Ribosomal protein L6 family protein 0.09 Orthogroups_2024-Update
A4A49_32163 No alias 60s ribosomal protein l6-1 0.03 Orthogroups_2024-Update
At1g18540 No alias 60S ribosomal protein L6-1... 0.04 Orthogroups_2024-Update
Bradi3g08900 No alias Ribosomal protein L6 family protein 0.11 Orthogroups_2024-Update
Bradi3g47410 No alias Ribosomal protein L6 family protein 0.11 Orthogroups_2024-Update
Brara.B02104.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.H02417.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Brara.I04782.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Cre01.g011000 No alias Ribosomal protein L6 family protein 0.06 Orthogroups_2024-Update
GRMZM2G024647 No alias Ribosomal protein L6 family protein 0.06 Orthogroups_2024-Update
Glyma.05G184000 No alias Ribosomal protein L6 family protein 0.08 Orthogroups_2024-Update
Glyma.15G271300 No alias Ribosomal protein L6 family protein 0.08 Orthogroups_2024-Update
HORVU6Hr1G041750.3 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU6Hr1G052600.3 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Kfl00488_0040 kfl00488_0040_v1.1 (p34091|rl6_mescr : 230.0) 60S ribosomal protein L6... 0.07 Orthogroups_2024-Update
LOC_Os04g39700 No alias 60S ribosomal protein L6, putative, expressed 0.03 Orthogroups_2024-Update
MA_108607g0010 No alias (p34091|rl6_mescr : 343.0) 60S ribosomal protein L6... 0.04 Orthogroups_2024-Update
PSME_00031628-RA No alias (p34091|rl6_mescr : 312.0) 60S ribosomal protein L6... 0.03 Orthogroups_2024-Update
PSME_00044973-RA No alias (p34091|rl6_mescr : 327.0) 60S ribosomal protein L6... 0.05 Orthogroups_2024-Update
Pp1s59_122V6 No alias 60s ribosomal protein 0.09 Orthogroups_2024-Update
Seita.1G214900.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Seita.7G134600.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.004G198400.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.006G116700.1 No alias component *(eL6) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Solyc05g054070 No alias 60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR) 0.08 Orthogroups_2024-Update
Solyc11g012110 No alias 60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR) 0.12 Orthogroups_2024-Update
Sopen05g032560 No alias Ribosomal protein L6e 0.1 Orthogroups_2024-Update
Sopen11g006900 No alias Ribosomal protein L6e 0.12 Orthogroups_2024-Update
evm.model.contig_2016.11 No alias (p34091|rl6_mescr : 131.0) 60S ribosomal protein L6... 0.1 Orthogroups_2024-Update
evm.model.tig00021127.127 No alias (at1g74050 : 196.0) Ribosomal protein L6 family protein;... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 125 232
IPR005568 Ribosomal_L6_N 4 60
No external refs found!