Glyma.08G160200

Description : Pentatricopeptide repeat (PPR-like) superfamily protein

Gene families : OG_42_0009809 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009809_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.08G160200
Cluster	HCCA clusters: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi3g14600	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.02	Orthogroups_2024-Update
MA_72886g0010	No alias	(at5g50390 : 592.0) Pentatricopeptide repeat (PPR-like)...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	284	331
IPR002885	Pentatricopeptide_repeat	384	431
IPR032867	DYW_dom	558	681
IPR002885	Pentatricopeptide_repeat	259	283
IPR002885	Pentatricopeptide_repeat	526	554
IPR002885	Pentatricopeptide_repeat	119	149
IPR002885	Pentatricopeptide_repeat	157	183
IPR002885	Pentatricopeptide_repeat	186	212

External Links

No external refs found!