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  5. Glyma.08G173500

Glyma.08G173500


Description : U5 small nuclear ribonucleoprotein helicase, putative


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G173500
Cluster HCCA clusters: Cluster_466

Target Alias Description ECC score Gene Family Method Actions
144158 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.04 Orthogroups_2024-Update
A4A49_03610 No alias dexh-box atp-dependent rna helicase dexh14 0.04 Orthogroups_2024-Update
At1g20960 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.05 Orthogroups_2024-Update
Bradi1g70057 No alias U5 small nuclear ribonucleoprotein helicase 0.06 Orthogroups_2024-Update
Bradi3g00980 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.03 Orthogroups_2024-Update
Cre17.g744147 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.02 Orthogroups_2024-Update
HORVU6Hr1G004350.3 No alias RNA helicase *(Brr2) 0.04 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.06 Orthogroups_2024-Update
PSME_00051380-RA No alias (at1g20960 : 1382.0) embryo defective 1507 (emb1507);... 0.05 Orthogroups_2024-Update
Potri.015G056501 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.07 Orthogroups_2024-Update
Sobic.001G457800.2 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
evm.model.contig_564.1 No alias (at1g20960 : 540.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.27 No alias (at1g20960 : 291.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
evm.model.tig00000865.28 No alias (at1g20960 : 1091.0) embryo defective 1507 (emb1507);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 518 694
IPR011545 DEAD/DEAH_box_helicase_dom 1365 1533
IPR001650 Helicase_C 752 894
IPR004179 Sec63-dom 1850 2167
IPR004179 Sec63-dom 1018 1320
No external refs found!