Glyma.08G173700

Description : photosystem II subunit R

Gene families : OG_42_0002845 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002845_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.08G173700
Cluster	HCCA clusters: Cluster_63

Target	Alias	Description	ECC score	Gene Family Method
231914	No alias	photosystem II subunit R	0.03	Orthogroups_2024-Update
A4A49_01941	No alias	photosystem ii 10 kda polypeptide, chloroplastic	0.03	Orthogroups_2024-Update
A4A49_20557	No alias	photosystem ii 10 kda polypeptide, chloroplastic	0.07	Orthogroups_2024-Update
Brara.G02097.1	No alias	component *(PsbR) of PS-II complex	0.03	Orthogroups_2024-Update
Brara.G03632.1	No alias	component *(PsbR) of PS-II complex	0.03	Orthogroups_2024-Update
Cre06.g261000	No alias	photosystem II subunit R	0.11	Orthogroups_2024-Update
Kfl00098_0060	kfl00098_0060_v1.1	(q40070\|psbr_horvu : 102.0) Photosystem II 10 kDa...	0.02	Orthogroups_2024-Update
MA_282g0010	No alias	(p06183\|psbr_soltu : 160.0) Photosystem II 10 kDa...	0.05	Orthogroups_2024-Update
Pp1s15_409V6	No alias	photosystem ii 10 kda polypeptide	0.05	Orthogroups_2024-Update
Pp1s41_264V6	No alias	photosystem ii 10 kda polypeptide	0.03	Orthogroups_2024-Update
Pp1s54_166V6	No alias	photosystem ii 10 kda polypeptide	0.03	Orthogroups_2024-Update
Pp1s54_167V6	No alias	photosystem ii 10 kda polypeptide	0.03	Orthogroups_2024-Update
Seita.6G032200.1	No alias	component *(PsbR) of PS-II complex	0.04	Orthogroups_2024-Update
Sobic.007G071500.1	No alias	component *(PsbR) of PS-II complex	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	InterProScan predictions
CC	GO:0009654	photosystem II oxygen evolving complex	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	InterProScan predictions
CC	GO:0016020	membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042651	thylakoid membrane	IEA	InterProScan predictions
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009512	cytochrome b6f complex	IEP	Predicted GO
CC	GO:0009522	photosystem I	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
CC	GO:0009538	photosystem I reaction center	IEP	Predicted GO
BP	GO:0015994	chlorophyll metabolic process	IEP	Predicted GO
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
BP	GO:0046148	pigment biosynthetic process	IEP	Predicted GO
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006814	PSII_PsbR	41	138

External Links

No external refs found!