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  5. Glyma.08G227400

Glyma.08G227400


Description : Histone superfamily protein


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G227400
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
176603 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
269004 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
438193 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
A4A49_56508 No alias histone h3.2 0.06 Orthogroups_2024-Update
A4A49_57080 No alias histone h3.2 0.06 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.06 Orthogroups_2024-Update
At1g09200 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
At5g10390 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.04 Orthogroups_2024-Update
At5g10400 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.04 Orthogroups_2024-Update
At5g65360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
Bradi1g49997 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00354.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Brara.B03430.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Brara.C00416.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.D00649.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
Brara.H02834.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Brara.I01745.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Brara.J02314.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Brara.J02315.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g268350 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g274000 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g505500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G176358 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G355773 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G058490.4 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU2Hr1G090210.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
HORVU4Hr1G073150.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU6Hr1G031580.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Kfl00240_g18 kfl00240_g18_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_350032g0010 No alias (at5g10980 : 266.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update
MA_56411g0010 No alias (at5g65360 : 262.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update
MA_74555g0010 No alias (at5g65360 : 127.0) Histone superfamily protein;... 0.06 Orthogroups_2024-Update
Mp3g07730.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp3g09090.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Mp7g10730.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp7g16200.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Mp7g18030.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Pp1s12_93V6 No alias histone h3 0.03 Orthogroups_2024-Update
Seita.3G227400.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Seita.4G066000.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Sobic.006G076400.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Solyc01g074000 No alias Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU) 0.06 Orthogroups_2024-Update
Solyc01g079110 No alias Histone H3 (AHRD V3.3 *** A0A0V0H170_SOLCH) 0.04 Orthogroups_2024-Update
Solyc01g080600 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.06 Orthogroups_2024-Update
Solyc01g086820 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.06 Orthogroups_2024-Update
Solyc02g077480 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.06 Orthogroups_2024-Update
Solyc04g074580 No alias Histone H3 (AHRD V3.3 *** K7VSQ3_MAIZE) 0.06 Orthogroups_2024-Update
Solyc10g008910 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.08 Orthogroups_2024-Update
Solyc12g056540 No alias Histone H3 (AHRD V3.3 *** K4DFY5_SOLLC) 0.07 Orthogroups_2024-Update
Sopen00g011880 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g030620 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen01g030790 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen01g032420 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen01g033540 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen01g033560 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen01g033830 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen02g022390 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen12g029140 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!