Glyma.08G232900

Description : DNA glycosylase superfamily protein

Gene families : OG_42_0000660 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.08G232900
Cluster	HCCA clusters: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
A4A49_13007	No alias	hypothetical protein	0.04	Orthogroups_2024-Update
A4A49_14405	No alias	hypothetical protein	0.03	Orthogroups_2024-Update
Bradi1g30920	No alias	DNA glycosylase superfamily protein	0.02	Orthogroups_2024-Update
Bradi4g30437	No alias	DNA glycosylase superfamily protein	0.02	Orthogroups_2024-Update
Bradi5g14770	No alias	DNA glycosylase superfamily protein	0.02	Orthogroups_2024-Update
Glyma.03G079100	No alias	DNA glycosylase superfamily protein	0.04	Orthogroups_2024-Update
HORVU3Hr1G078260.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
MA_114043g0010	No alias	(at5g44680 : 278.0) DNA glycosylase superfamily protein;...	0.04	Orthogroups_2024-Update
PSME_00048088-RA	No alias	(at5g57970 : 202.0) DNA glycosylase superfamily protein;...	0.04	Orthogroups_2024-Update
Potri.018G106900	No alias	DNA glycosylase superfamily protein	0.03	Orthogroups_2024-Update
Seita.2G207200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.6G191700.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc10g005210	No alias	DNA-3-methyladenine glycosylase, putative (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen02g026780	No alias	Methyladenine glycosylase	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003905	alkylbase DNA N-glycosylase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043733	DNA-3-methylbase glycosylase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEP	Predicted GO
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
BP	GO:0005976	polysaccharide metabolic process	IEP	Predicted GO
BP	GO:0009056	catabolic process	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0016052	carbohydrate catabolic process	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
MF	GO:0016161	beta-amylase activity	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:1901575	organic substance catabolic process	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005019	Adenine_glyco	209	381

External Links

No external refs found!

Glyma.08G232900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation