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  5. Glyma.08G252500

Glyma.08G252500


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_42_0003575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003575_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G252500
Cluster HCCA clusters: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
At3g49180 No alias Protein ROOT INITIATION DEFECTIVE 3... 0.03 Orthogroups_2024-Update
Bradi3g19780 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02191.1 No alias pre-40S ribosomal subunit assembly factor *(RID3) 0.05 Orthogroups_2024-Update
Brara.F01618.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Cre06.g251350 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Mp7g09900.1 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.05 Orthogroups_2024-Update
Seita.5G146000.1 No alias pre-40S ribosomal subunit assembly factor *(RID3) 0.05 Orthogroups_2024-Update
Solyc04g078780 No alias Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072VH71_MEDTR) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 111 148
IPR001680 WD40_repeat 168 203
IPR001680 WD40_repeat 260 295
No external refs found!