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  5. Glyma.08G256300

Glyma.08G256300


Description : little nuclei1


Gene families : OG_42_0001967 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G256300
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
At1g13220 No alias nuclear matrix constituent protein-related... 0.03 Orthogroups_2024-Update
At1g67230 No alias Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5] 0.04 Orthogroups_2024-Update
At1g68790 No alias Protein CROWDED NUCLEI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA42] 0.05 Orthogroups_2024-Update
At5g65770 No alias little nuclei4 [Source:TAIR;Acc:AT5G65770] 0.06 Orthogroups_2024-Update
Bradi3g53047 No alias little nuclei1 0.06 Orthogroups_2024-Update
Glyma.05G109300 No alias little nuclei4 0.03 Orthogroups_2024-Update
Kfl00193_0080 kfl00193_0080_v1.1 (at1g67230 : 101.0) Encodes a nuclear coiled-coil... 0.03 Orthogroups_2024-Update
MA_31023g0010 No alias (at5g65770 : 444.0) LITTLE NUCLEI4 (LINC4); EXPRESSED... 0.04 Orthogroups_2024-Update
Mp3g21160.1 No alias CRWN nuclear lamina lamin-like protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!