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  5. Sopen09g027460

Sopen09g027460


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g027460
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
30095 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Orthogroups_2024-Update
Bradi1g27320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g35640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G110483 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G170896 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G399433 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.06G161900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G322500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G119700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G066100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G194400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G019670.6 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU1Hr1G052060.4 No alias RNA editing factor *(MEF25) 0.02 Orthogroups_2024-Update
HORVU1Hr1G074220.1 No alias RNA editing factor *(MEF21) 0.02 Orthogroups_2024-Update
HORVU1Hr1G083680.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G053030.5 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
HORVU3Hr1G092840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G014780.12 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g60250 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g46980 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g64370 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g36350 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005439-RA No alias (at2g03880 : 518.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00013280-RA No alias (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00014659-RA No alias (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00018173-RA No alias (at3g23330 : 494.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00036106-RA No alias (at4g02750 : 199.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00051746-RA No alias (at3g03580 : 720.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.006G244500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc09g009790 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 795 919
IPR002885 Pentatricopeptide_repeat 318 362
IPR002885 Pentatricopeptide_repeat 218 264
IPR002885 Pentatricopeptide_repeat 621 668
IPR002885 Pentatricopeptide_repeat 422 451
IPR002885 Pentatricopeptide_repeat 394 419
IPR002885 Pentatricopeptide_repeat 522 549
IPR002885 Pentatricopeptide_repeat 189 216
IPR002885 Pentatricopeptide_repeat 95 115
IPR002885 Pentatricopeptide_repeat 118 148
No external refs found!