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  5. Glyma.08G275500

Glyma.08G275500


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G275500
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
A4A49_08803 No alias hypothetical protein 0.06 Orthogroups_2024-Update
Brara.I04573.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Potri.006G253601 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Seita.7G310700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G129700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g076630 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 403 475
IPR029411 RG-lyase_III 489 678
IPR010325 Rhamnogal_lyase 49 244
No external refs found!