Sopen09g027500

Description : Core histone H2A/H2B/H3/H4

Gene families : OG_42_0000970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g027500
Cluster	HCCA clusters: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
Brara.D00458.1	No alias	histone *(H2A)	0.02	Orthogroups_2024-Update
Glyma.04G149200	No alias	histone H2A protein 9	0.02	Orthogroups_2024-Update
LOC_Os10g28230	No alias	Core histone H2A/H2B/H3/H4 domain containing protein,...	0.03	Orthogroups_2024-Update
Pp1s219_44V6	No alias	histone 2	0.03	Orthogroups_2024-Update
evm.model.tig00021108.27	No alias	(q8h7y8\|h2av1_orysa : 197.0) Probable histone H2A...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	109	138
IPR007125	Histone_H2A/H2B/H3	15	108

External Links

No external refs found!