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  5. Glyma.08G296900

Glyma.08G296900


Description : Pectate lyase family protein


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.08G296900

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
At1g14420 No alias Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] 0.03 Orthogroups_2024-Update
At3g24230 No alias Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5] 0.03 Orthogroups_2024-Update
Brara.B01305.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.04 Orthogroups_2024-Update
LOC_Os05g22800 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g05260 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10394547g0010 No alias (at4g22090 : 188.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_91467g0010 No alias (at4g24780 : 570.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_91467g0020 No alias (at4g24780 : 289.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00009672-RA No alias (at5g48900 : 608.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.4G033200.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.003G322800.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Solyc02g080910 No alias Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC) 0.02 Orthogroups_2024-Update
Sopen02g025600 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen05g003050 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 35 87
IPR002022 Pec_lyase 185 366
No external refs found!