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  5. Glyma.09G000200

Glyma.09G000200


Description : hAT transposon superfamily


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G000200
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G121600 No alias hAT transposon superfamily 0.04 Orthogroups_2024-Update
Glyma.09G104100 No alias hAT transposon superfamily 0.04 Orthogroups_2024-Update
Glyma.14G162700 No alias hAT transposon superfamily 0.08 Orthogroups_2024-Update
LOC_Os01g33260 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
PSME_00041191-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Solyc03g007510 No alias hAT transposon superfamily (AHRD V3.3 *** AT1G79740.4) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR007021 DUF659 247 395
IPR008906 HATC_C_dom 612 687
No external refs found!