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  5. Glyma.09G013500

Glyma.09G013500


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G013500
Cluster HCCA clusters: Cluster_459

Target Alias Description ECC score Gene Family Method Actions
442013 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
At4g16390 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.04 Orthogroups_2024-Update
At5g46580 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Orthogroups_2024-Update
Brara.A01912.1 No alias plastidial RNA processing factor *(SVR7) 0.03 Orthogroups_2024-Update
Brara.H00857.1 No alias plastidial RNA processing factor *(SVR7) 0.03 Orthogroups_2024-Update
Potri.001G144600 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Potri.016G006800 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Pp1s258_9V6 No alias F10E10.5; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Solyc08g077120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc08g077140 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen08g025700 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 366 413
IPR002885 Pentatricopeptide_repeat 295 344
IPR002885 Pentatricopeptide_repeat 156 201
IPR002885 Pentatricopeptide_repeat 480 525
IPR033443 PPR_long 672 824
IPR002885 Pentatricopeptide_repeat 233 253
IPR002885 Pentatricopeptide_repeat 264 292
IPR002885 Pentatricopeptide_repeat 538 596
IPR002885 Pentatricopeptide_repeat 608 666
No external refs found!