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  5. Glyma.09G025300

Glyma.09G025300


Description : dicer-like 2


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G025300
Cluster HCCA clusters: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
At3g03300 No alias Endoribonuclease Dicer homolog 2... 0.03 Orthogroups_2024-Update
At5g20320 No alias Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634] 0.03 Orthogroups_2024-Update
HORVU1Hr1G042710.5 No alias endoribonuclease *(DCL3) 0.02 Orthogroups_2024-Update
Mp7g12090.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Orthogroups_2024-Update
PSME_00044400-RA No alias (at1g01040 : 490.0) Encodes a Dicer homolog. Dicer is a... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016787 hydrolase activity IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003100 PAZ_dom 853 983
IPR005034 Dicer_dimerisation_dom 596 670
IPR001650 Helicase_C 422 526
IPR000999 RNase_III_dom 1025 1142
IPR000999 RNase_III_dom 1214 1325
IPR006935 Helicase/UvrB_N 62 229
No external refs found!