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  5. Glyma.09G084600

Glyma.09G084600


Description : periodic tryptophan protein 2


Gene families : OG_42_0004382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004382_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G084600
Cluster HCCA clusters: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
At1g15440 No alias Periodic tryptophan protein 2... 0.04 Orthogroups_2024-Update
Bradi2g19560 No alias periodic tryptophan protein 2 0.04 Orthogroups_2024-Update
Brara.F01061.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.03 Orthogroups_2024-Update
Cre06.g254150 No alias periodic tryptophan protein 2 0.02 Orthogroups_2024-Update
Potri.001G173500 No alias periodic tryptophan protein 2 0.03 Orthogroups_2024-Update
Pp1s87_39V6 No alias T16N11.20; transducin family protein / WD-40 repeat... 0.02 Orthogroups_2024-Update
Seita.3G175900.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.03 Orthogroups_2024-Update
Sobic.009G201200.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.03 Orthogroups_2024-Update
Sopen03g038950 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
evm.model.contig_3478.9 No alias (at1g15440 : 433.0) periodic tryptophan protein 2... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 794 899
IPR001680 WD40_repeat 134 167
IPR001680 WD40_repeat 512 549
IPR001680 WD40_repeat 390 420
IPR001680 WD40_repeat 563 591
IPR001680 WD40_repeat 427 463
No external refs found!